[SCore-users] How to specify a input data file with scrun?
yoneya at nanolc.jst.go.jp
yoneya at nanolc.jst.go.jp
Tue Apr 1 00:03:36 JST 2003
Dear SCore pilots:
I finally succeeded to run my job on our SCore cluster system.
Thanks a lot for many valuable suggestions on this list!
The final commands which resulted in succesful run are as follows.
scrun -nodes=4x1 scatter -node 0 -file /tmp/moldata.tpr :: mdrun_d -np 4 -s /tmp/moldata.tpr -deffnm moldata < moldata.tpr
Where, mdrun_d is the GROMACS main MD program name and moldata.tpr is the input data file name.
I need the both -s and -deffnm options since the former specifies
the absolute place of the input file and the latter specifies
the generic input/output file names.
I hope it helps to whom wants to run GROMACS on SCore running
system.
Thanks again your valuable suggestions which lead to me the goal.
Best wishes.
Makoto Yoneya
JST/ERATO Yokoyama Nano-structured LC project.
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