From ma_undoo_0627 ＠ yahoo.co.jp Tue Mar 4 13:15:09 2008 From: ma_undoo_0627 ＠ yahoo.co.jp (=?iso-2022-jp?b?bWFfdW5kb29fMDYyNyAbJEIhdxsoQiB5YWhvby5jby5qcA==?=) Date: Tue, 4 Mar 2008 13:15:09 +0900 (JST) Subject: [SCore-users-jp] rsh =?iso-2022-jp?b?GyRCJEskRCQkJEYbKEI=?= Message-ID: <20080304041509.46288.qmail@web3005.mail.tnz.yahoo.co.jp> 呉工業高等専門学校，電気情報工学科５年の安藤昌博です [root ＠ server ~]# cd /opt/score/etc [root ＠ server etc]# /opt/score/deploy/mkpmethernetconf -group pcc \ -speed 1000 > pm-ethernet.conf opening output fils " -speed" connect to address 192.168.197.10: Connection refused Trying krb4 rsh... connect to address 192.168.197.10: Connection refused trying normal rsh (/usr/bin/rsh) connect to address 192.168.197.11: Connection refused Trying krb4 rsh... connect to address 192.168.197.11: Connection refused trying normal rsh (/usr/bin/rsh) 上記のエラーがでたため，rshが正常に行なえませんでした． /usr/bin/rshのファイルをチェックすると，このファイルは，MIME型だったため テキストエディタで開くことは出来ませんでした． このファイルを修正することが出来ればrshは正常に動作するのでしょうか? -------------------------------------- Easy + Joy + Powerful = Yahoo! Bookmarks x Toolbar http://pr.mail.yahoo.co.jp/toolbar/ From kameyama ＠ pccluster.org Tue Mar 4 13:41:18 2008 From: kameyama ＠ pccluster.org (Kameyama Toyohisa) Date: Tue, 04 Mar 2008 13:41:18 +0900 Subject: [SCore-users-jp] rsh =?ISO-2022-JP?B?GyRCJEskRCQkJEYbKEI=?= In-Reply-To: <20080304041509.46288.qmail@web3005.mail.tnz.yahoo.co.jp> References: <20080304041509.46288.qmail@web3005.mail.tnz.yahoo.co.jp> Message-ID: <47CCD2EE.5050505@pccluster.org> 亀山です. ma_undoo_0627 ＠ yahoo.co.jp さんは書きました: > [root ＠ server ~]# cd /opt/score/etc [root ＠ server etc]# > /opt/score/deploy/mkpmethernetconf -group pcc \ -speed 1000 > > pm-ethernet.conf pcc の後の \ はとってください. -speed オプションが渡っていません. > opening output fils " -speed" " -speed" ファイルができてしまっています. > connect to address 192.168.197.10: Connection refused > Trying krb4 rsh... > connect to address 192.168.197.10: Connection refused > trying normal rsh (/usr/bin/rsh) > connect to address 192.168.197.11: Connection refused > Trying krb4 rsh... > connect to address 192.168.197.11: Connection refused > trying normal rsh (/usr/bin/rsh) > > > 上記のエラーがでたため，rshが正常に行なえませんでした． このメッセージ自体は問題ありません. Centos を full install すると, rsh は /usr/kerberos/bin/rsh が path に登録されます. (bash なら $ type rsh csh なら % which rsh で確認できます.) これは kerberos 5 を使用する rsh です. kerberos5 が使用できる環境にないと, この rsh は krberos 4 で接続しようとします. > connect to address 192.168.197.10: Connection refused > Trying krb4 rsh... > connect to address 192.168.197.10: Connection refused それも失敗すると /usr/bin にある通常の rsh を呼び出します. > trying normal rsh (/usr/bin/rsh) これに失敗したときは, 更にエラーが出るはずなのですが, ここには出ていません ので成功したと思います. (ただ, 上記のエラーのため, 100 Base-T の設定になっていますが...) pm-ethernet.conf を見てください. このメッセージを出力したくない場合は, 環境変数 SCORE_RSH を /usr/bin/rsh に設定して, 直接 /usr/bin/rsh を呼び出してください. Kameyama Toyohisa From ma_undoo_0627 ＠ yahoo.co.jp Fri Mar 7 11:40:10 2008 From: ma_undoo_0627 ＠ yahoo.co.jp (=?iso-2022-jp?b?bWFfdW5kb29fMDYyNyAbJEIhdxsoQiB5YWhvby5jby5qcA==?=) Date: Fri, 7 Mar 2008 11:40:10 +0900 (JST) Subject: [SCore-users-jp] rsh =?iso-2022-jp?b?GyRCJEskRCQkJEYbKEI=?= Message-ID: <20080307024010.77340.qmail@web3010.mail.tnz.yahoo.co.jp> ありがとうございました。さっそく \ を取り除いてみました。 > > [root ＠ server ~]# /opt/score/deploy/mkpmethernetconf -group pcc > -speed 1000 > > pm-ethernet.conf > SCBD: No scoreboard host specified (SCBDSERV) > > 以前のメッセージとは異なり上記のメッセージがでてきました。 > rshに関するメッセージではないようですが，実際にPM_TESTを行なった場合も お > なじメッセージがでます(PM_TESTでは rshに関するメッセージもでました。) > > [root ＠ server ~]# rpmtest comp1 ethernet -reply connect to address > 192.168.197.11: Connection refused > Trying krb4 rsh... > connect to address 192.168.197.11: Connection refused > trying normal rsh (/usr/bin/rsh) > SCBD: No scoreboard host specified (SCBDSERV) > network ethernet not found in scorboard > > これらのメッセージを処理する方法を教えていただけないでしょうか? > また，環境変数 SCORE_RSH はどこにあるのですか? > よろしくおねがいします。 > > 呉工業高等専門学校 > 電気情報工学科5年 > 安藤 昌博 -------------------------------------- Easy + Joy + Powerful = Yahoo! Bookmarks x Toolbar http://pr.mail.yahoo.co.jp/toolbar/ From kameyama ＠ pccluster.org Mon Mar 10 09:49:05 2008 From: kameyama ＠ pccluster.org (Kameyama Toyohisa) Date: Mon, 10 Mar 2008 09:49:05 +0900 Subject: [SCore-users-jp] rsh =?ISO-2022-JP?B?GyRCJEskRCQkJEYbKEI=?= In-Reply-To: <20080307024010.77340.qmail@web3010.mail.tnz.yahoo.co.jp> References: <20080307024010.77340.qmail@web3010.mail.tnz.yahoo.co.jp> Message-ID: <47D48581.6020307@pccluster.org> 亀山です. ma_undoo_0627 ＠ yahoo.co.jp さんは書きました: > ありがとうございました。さっそく \ を取り除いてみました。 >> [root ＠ server ~]# /opt/score/deploy/mkpmethernetconf -group pcc >> -speed 1000 >>> pm-ethernet.conf >> SCBD: No scoreboard host specified (SCBDSERV) >> >> 以前のメッセージとは異なり上記のメッセージがでてきました。 >> rshに関するメッセージではないようですが，実際にPM_TESTを行なった場合も > お >> なじメッセージがでます(PM_TESTでは rshに関するメッセージもでました。) SCore で group を使用するためには scoreboard を使用します. そして, scoreboard がどこで起動しているかを知らせるために, 環境変数 SCBDSERV を使用します. このエラーはその環境変数が設定されていないときに出力されます. この変数は, 通常 server を設定したときに /etc/score.conf /etc/profile.d/score.* が作成されるはずなんですが... http://www.pccluster.org/score/dist/score/html/ja/installation/sys-server.html に書かれている項目を確認してください. >> また，環境変数 SCORE_RSH はどこにあるのですか? 通常は設定されていません. 設定する場合は /etc/profile.d/score.* に入れてください. kameyama Toyohisa From ishikawa ＠ is.s.u-tokyo.ac.jp Tue Mar 11 14:57:46 2008 From: ishikawa ＠ is.s.u-tokyo.ac.jp (Yutaka Ishikawa) Date: Tue, 11 Mar 2008 14:57:46 +0900 (JST) Subject: [SCore-users-jp] CFP Message-ID: <20080311.145746.317108800.ishikawa@is.s.u-tokyo.ac.jp> SCoreユ−ザの皆様、 クラスタを医療面で使われている方もいらっしゃるかと思い、関係する論文募集案内を 流させて頂きます。 石川＠PCクラスタコンソ−シアム会長 ********************************************************************* Call for Papers MICCAI-Grid Workshop Medical imaging on grids: achievements and perspectives September 6, 2008. In conjunction with MICCAI. New York, USA http://www.i3s.unice.fr/~johan/MICCAI-Grid ********************************************************************* Medical image computing raises new challenges related to the scale and complexity of the required analysis, for example in studies that require the federation of large data sets or in complex models and processing. Grid technology is addressing problems related to large data sets manipulation over wide computing networks, providing tools for exchanging data and computing power and additionally serving as a vector for structuring the user communities as they enable cross-enterprises collaborations. In the medical imaging area, grids provide a foundational layer that can be exploited e.g., to build patient-specific models, reduce computing time to meet clinical practice constraints, algorithms validation and optimization, or collaborative studies on rare diseases. Specific grids initiatives are emerging worldwide, demonstrating a growing interest from the health community for such infrastructures and impacting the way to conduct medical research. However, deploying medical image analysis applications on grid infrastructures requires a proper understanding of the specific needs in this area. The scientific objectives of the MICCAI-Grid workshop are both to demonstrate the current achievements of grid technologies within the medical imaging community and to precisely identify the fundamental problems limiting the adoption of existing systems and methods. The workshop also intends to stimulate the community to build new collaborations by taking advantage of the sharing capabilities of grids. The MICCAI-Grid workshop will be held on 6 September 2008, in conjunction with the MICCAI conference. *** Topics: We kindly invite you to submit papers including the following topics: * Medical image analysis application using grids * Medical image pipelines and workflows * Distributed and heterogeneous medical databases * Medical data representation, structure and annotation * Large scale and statistical studies * Content-based retrieval and data mining * Methods evaluation and parameter sweep studies * Medical data visualization using grid resources * Dedicated grid infrastructures * Standards for exchanging data and algorithms *** Paper Submission: Please submit papers of up to 10 pages until April 28 following the format and instructions in http://www.i3s.unice.fr/~johan/MICCAI-Grid. The workshop proceedings will be distributed in CD-ROM and published as a special issue of the Insight Journal. Extended versions of selected papers will be invited for a special issue of Medical Image Analysis. *** Important dates: Deadline for submission: May 9, 2008 Acceptance notification: June 20, 2008 Camera ready: July 18, 2008 Workshop venue: September 6, 2008 *** Program committee: Christian Barillot, CNRS / IRISA, FR Ignacio Blanquer Espert, Univ Politecnica de Valencia, ES Stephan Erberich, University of Southern California, USA Alejandro Frangi, Pompeu Fabra University, ES Marco Antonio Gutierrez, Heart Institute, Sao Paulo, BR Tristan Glatard, University of Amsterdam, NL Ron Kikinis, Harvard Medical School, Boston, USA Diane Lingrand, University Nice - Sophia Antipolis / I3S, FR Isabelle Magnin, INSERM-CNRS / CREATIS-LRMN, FR David Manset, Maat-G, FR Richard McClatchey, University of West England, UK Toshiharu Nakai, Nat Center of Geriatrics and Gerontology, Aichi, JP Xavier Pennec, INRIA Sophia Antipolis, FR Daniel Rueckert, Imperial College, UK Arthur Toga, University of California, Los Angeles, USA *** Workshop organizers / Contacts Silvia D. Olabarriaga, Amsterdam Medical Center, University of Amsterdam, NL s.d.olabarriaga ＠ amc.uva.nl Johan Montagnat, CNRS / I3S, FR johan ＠ i3s.unice.fr From hori ＠ allinea.com Mon Mar 17 22:44:02 2008 From: hori ＠ allinea.com (Atsushi HORI) Date: Mon, 17 Mar 2008 22:44:02 +0900 Subject: [SCore-users-jp] Re: [SCore-users] new Cluster In-Reply-To: <47DE4243.3010706@informatik.tu-cottbus.de> References: <47DE4243.3010706@informatik.tu-cottbus.de> Message-ID: <47AE709D-EDEF-4EBB-A66D-7E32CC57F1B2@allinea.com> Hi, Paul, On 2008/03/17, at 19:04, Paul Kröher wrote: > we are planning a new small cluster with 16 nodes with two quad- > core-CPUs per node. Sounds good. > We tend to use Infiniband. Is this currently supported or what > network you suggest to use? Currently Ethernet and Myrinet (2)XP are supported in SCore 6 which is the current version. Infiniband, Myrinet10G as well as Ethernet will be supported in upcoming SCore 7 which is scheduled to be released in this year. > Which controllers are working fine? We usually recommend to use the Intel E1000 NIC for best performance. > Currently Intel an AMD offers 4-Core-CPUs. Which CPU-type you > suggest to use? We are aware of a performance problem with SCore 6 and earlier versions when the number of cores are 4 or above. This problem will also be fixed in SCore 7. _______________________________________________ SCore-users mailing list SCore-users ＠ pccluster.org http://www.pccluster.org/mailman/listinfo/score-users From pkroeher ＠ Informatik.tu-Cottbus.DE Mon Mar 17 19:04:51 2008 From: pkroeher ＠ Informatik.tu-Cottbus.DE (=?ISO-8859-15?Q?Paul_Kr=F6her?=) Date: Mon, 17 Mar 2008 11:04:51 +0100 Subject: [SCore-users-jp] [SCore-users] new Cluster Message-ID: <47DE4243.3010706@informatik.tu-cottbus.de> Hi, we are planning a new small cluster with 16 nodes with two quad-core-CPUs per node. We tend to use Infiniband. Is this currently supported or what network you suggest to use? Which controllers are working fine? Currently Intel an AMD offers 4-Core-CPUs. Which CPU-type you suggest to use? -- ----------------------------------------------------- Greetings Paul Kröher ----------------------------------------------------- _______________________________________________ SCore-users mailing list SCore-users ＠ pccluster.org http://www.pccluster.org/mailman/listinfo/score-users